Bradford Condon PhD

Bioinformatics, Web & Mobile Development


ecology

For those of you running MacQIIME on OSX El Capitan or higher, you may (like me) find that the MacQIIME executable is no longer in your path.

I was a little confused:I couldn’t find it on my system, although I still had my MacQIIME installation in the default location.  What gives?

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Phyloseq is a fantastic R package that really helped me get started in R.  If you need to process your metagenomic data but lack the experience in statistics/R to use, say, the ecology stats R package VEGAN, I highly recommend giving Phyloseq a try.  Running through the vignettes will produce great heatmaps, taxonomy plots, and PCA/NMDS plots.

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